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1

Classical molecular interaction potentials: Improved setup procedure in molecular dynamics simulations of proteins

Josep Lluis Gelpí, Susana G. Kalko, Xavier Barril, Jordi Cirera, Xavier de la Cruz, F. Javier Luque, Modesto Orozco

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 370 KB

english, 2001

2

Colecistitis enfisematosa en sospecha de infecciÃ³n por SARS-CoV-2

Bernabeu GarcÃa, Ana, De la Cruz Verdun, Joan, SuÃ±ol Sala, Xavier

Journal:

Cirugía Española

Year:

2020

File:

PDF, 444 KB

2020

3

Characterization of disease-associated single amino acid polymorphisms in terms of sequence and structure properties

Carles Ferrer-Costa, Modesto Orozco, Xavier de la Cruz

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 631 KB

english, 2002

4

Prediction of pathological mutations in proteins: the challenge of integrating sequence conservation and structure stability principles

Riera, Casandra, Lois, Sergio, de la Cruz, Xavier

Journal:

Wiley Interdisciplinary Reviews: Computational Molecular Science

Year:

2014

Language:

english

File:

PDF, 2.16 MB

english, 2014

5

Identification and characterization of the novel point mutation m.3634A>G in the mitochondrial MT-ND1 gene associated with LHON syndrome

Carreño-Gago, Lidia, Gamez, Josep, Cámara, Yolanda, Alvarez de la Campa, Elena, Aller-Alvarez, Juan Sebastian, Moncho, Dulce, Salvado, Maria, Galan, Alicia, de la Cruz, Xavier, Pinós, Tomàs, García-Ar

Journal:

Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease

Year:

2016

Language:

english

File:

PDF, 818 KB

english, 2016

6

PMut: a web-based tool for the annotation of pathological variants on proteins, 2017 update

López-Ferrando, Víctor, Gazzo, Andrea, de la Cruz, Xavier, Orozco, Modesto, Gelpí, Josep Ll

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 1.12 MB

english, 2017

7

Improving the diagnosis of cobalamin and related defects by genomic analysis, plus functional and structural assessment of novel variants

Brasil, Sandra, Leal, Fátima, Vega, Ana, Navarrete, Rosa, Ecay, María Jesús, Desviat, Lourdes R., Riera, Casandra, Padilla, Natàlia, de la Cruz, Xavier, Couce, Mari Luz, Martin-Hernández, Elena, Morai

Journal:

Orphanet Journal of Rare Diseases

Year:

2018

Language:

english

File:

PDF, 2.01 MB

english, 2018

8

Suspended Materials in River Waters Differentially Enrich Class 1 Integron- and IncP-1 Plasmid-Carrying Bacteria in Sediments

De la Cruz Barrón, Magali, Merlin, Christophe, Guilloteau, Hélène, Montargès-Pelletier, Emmanuelle, Bellanger, Xavier

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 544 KB

english, 2018

9

Consenso 2018 de la Sociedad Española de Anatomía Patológica y la Sociedad Española de Oncología Médica sobre el diagnóstico y tratamiento del cáncer de origen desconocido

Matías-Guiu, Xavier, Fusté, Victòria, Iglesias, Lara, Balañá, Carmen, Concha, Ángel, de la Cruz-Merino, Luis, Nieto, Beatriz, Pané, Maria, Sanz, Julián, Losa, Ferran

Journal:

Revista Española de Patología

Year:

2019

File:

PDF, 1.23 MB

2019

10

Epigenetic signature for attention-deficit/hyperactivity disorder: identification of miR-26b-5p, miR-185-5p, and miR-191-5p as potential biomarkers in peripheral blood mononuclear cells

Sánchez-Mora, Cristina, Soler Artigas, María, Garcia-Martínez, Iris, Pagerols, Mireia, Rovira, Paula, Richarte, Vanesa, Corrales, Montse, Fadeuilhe, Christian, Padilla, Natàlia, de la Cruz, Xavier, Fr

Journal:

Neuropsychopharmacology

Year:

2018

Language:

english

File:

PDF, 1.08 MB

english, 2018

11

Fast synthesis of Na2Ti3O7 system synthesized by microwave-assisted hydrothermal method: Electrical properties

Basilio, L.A.L., Xavier, F., Sales, J.C.C., Andrade, J.C.S., Anglada- Rivera, J., Aguilera, L., Silva, R.S., Rodriguez-Hernandez, J., PÃ©rez de la Cruz, J., Leyet, Y.

Journal:

Ceramics International

Year:

2020

File:

PDF, 1.63 MB

2020

12

Updating the Mediterranean Diet Pyramid towards Sustainability: Focus on Environmental Concerns

Serra-Majem, LluÃs, Tomaino, Laura, Dernini, Sandro, Berry, Elliot M., Lairon, Denis, Ngo de la Cruz, Joy, Bach-Faig, Anna, Donini, Lorenzo M., Medina, Francesc-Xavier, Belahsen, Rekia, Piscopo, Suza

Journal:

International Journal of Environmental Research and Public Health

Year:

2020

File:

PDF, 1.05 MB

2020

13

Do protein motifs read the histone code?

Xavier de la Cruz, Sergio Lois, Sara Sánchez-Molina, Marian A. Martínez-Balbás

Journal:

Year:

2005

Language:

english

File:

PDF, 263 KB

english, 2005

14

Representation of noncovalent interactions in protein structures

Xavier de la Cruz, Jesús Reverter, Ignacio Fita

Journal:

Journal of Molecular Graphics

Year:

1992

Language:

english

File:

PDF, 524 KB

english, 1992

15

Bacterial conjugation: a two-step mechanism for DNA transport

Matxalen Llosa, F. Xavier Gomis-Rüth, Miquel Coll, Fernando de la Cruz

Journal:

Molecular Microbiology

Year:

2002

Language:

english

File:

PDF, 81 KB

english, 2002

16

Preservation of protein clefts in comparative models

David Piedra, Sergi Lois, Xavier de la Cruz

Journal:

BMC Structural Biology

Year:

2008

Language:

english

File:

PDF, 1.12 MB

english, 2008

17

The structural homology between uteroglobin and the pore-forming domain of colicin A suggests a possible mechanism of action for uteroglobin

Xavier De La Cruz, B. Lee

Journal:

Protein Science

Year:

1996

Language:

english

File:

PDF, 2.06 MB

english, 1996

18

Use of structure comparison methods for the refinement of protein structure predictions. I. Identifying the structural family of a protein from low-resolution models

Xavier de la Cruz, Ian Sillitoe, Christine Orengo

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2002

Language:

english

File:

PDF, 417 KB

english, 2002

19

Linear response theory: An alternative to PB and GB methods for the analysis of molecular dynamics trajectories?

Antonio Morreale, Xavier de la Cruz, Tim Meyer, Josep Lluís Gelpí, F. Javier Luque, Modesto Orozco

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 598 KB

english, 2004

20

Partition of protein solvation into group contributions from molecular dynamics simulations

Antonio Morreale, Xavier de la Cruz, Tim Meyer, Josep Lluís Gelpí, F. Javier Luque, Modesto Orozco

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 774 KB

english, 2005

21

Use of bioinformatics tools for the annotation of disease-associated mutations in animal models

Carles Ferrer-Costa, Modesto Orozco, Xavier de la Cruz

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 311 KB

english, 2005

22

10.1038/35054586

Gomis-Rüth, F. Xavier, Moncalián, Gabriel, Pérez-Luque, Rosa, González, Ana, Cabezón, Elena, de la Cruz, Fernando, Coll, Miquel

Journal:

Year:

2001

Language:

english

File:

PDF, 567 KB

english, 2001

23

Recognition and processing of the origin of transfer DNA by conjugative relaxase TrwC

Guasch, Alicia, Lucas, María, Moncalián, Gabriel, Cabezas, Matilde, Pérez-Luque, Rosa, Gomis-Rüth, F Xavier, de la Cruz, Fernando, Coll, Miquel

Journal:

Natural Structural Biology

Year:

2003

Language:

english

File:

PDF, 850 KB

english, 2003

24

Corrigendum: Recognition and processing of the origin of transfer DNA by conjugative relaxase TrwC

Guasch, Alicia, Lucas, María, Moncalián, Gabriel, Cabezas, Matilde, Pérez-Luque, Rosa, Gomis-Rüth, F Xavier, de la Cruz, Fernando, Coll, Miquel

Journal:

Nature Structural and Molecular Biology

Year:

2004

Language:

english

File:

PDF, 49 KB

english, 2004

25

Use of surface area computations to describe atom–atom interactions

Xavier de la Cruz, Miquel Calvo

Journal:

Journal of Computer-Aided Molecular Design

Year:

2001

Language:

english

File:

PDF, 160 KB

english, 2001

26

Total rupture of the gastro-oesophageal junction after blunt trauma

Jaume Fernández-Llamazares, Pau Moreno, Francesc García, Xavier Mira, Rosa Catalán, Joan De la Cruz

Journal:

European Journal of Surgery

Year:

1999

Language:

english

File:

PDF, 31 KB

english, 1999

27

A fast method for the determination of fractional contributions to solvation in proteins

David Talavera, Antonio Morreale, Tim Meyer, Adam Hospital, Carles Ferrer-Costa, Josep Lluis Gelpi, Xavier de la Cruz, Robert Soliva, F. Javier Luque, Modesto Orozco

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 615 KB

english, 2006

28

Factors limiting the performance of prediction-based fold recognition methods

Xavier De La Cruz, Janet M. Thornton

Journal:

Protein Science

Year:

1999

Language:

english

File:

PDF, 732 KB

english, 1999

29

Characterization of the impact of alternative splicing on protein dynamics: The cases of glutathione S-transferase and ectodysplasin-A isoforms

Montserrat Barbany, Jordi Morata, Tim Meyer, Sergi Lois, Modesto Orozco, Xavier de la Cruz

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.25 MB

english, 2012

30

An Atomistic View to the Gas Phase Proteome

Tim Meyer, Xavier de la Cruz, Modesto Orozco

Journal:

Year:

2009

Language:

english

File:

PDF, 660 KB

english, 2009

31

Adenocarcinoma de vesícula biliar: estadio tumoral, factores pronósticos histológicos y supervivencia

Joan de la Cruz, L.A. Hidalgo, J. Feliu, Carme Admella, R. Muns, M. del Bas, Xavier Suñol

Journal:

Cirugía Española

Year:

2005

File:

PDF, 72 KB

2005

32

Discrete representations of the protein Cα chain

Xavier F de la Cruz, Michael W Mahoney, Byungkook Lee

Journal:

Folding and Design

Year:

1997

Language:

english

File:

PDF, 196 KB

english, 1997

33

A new procedure for constructing peptides into a given C

Yanli Wang, Hassan I Huq, Xavier F de la Cruz, Byungkook Lee

Journal:

Folding and Design

Year:

1998

Language:

english

File:

PDF, 184 KB

english, 1998

34

A procedure for identifying homologous alternative splicing events

David Talavera, Adam Hospital, Modesto Orozco, Xavier de la Cruz

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 425 KB

english, 2007

35

The functional modulation of epigenetic regulators by alternative splicing

Sergio Lois, Noemí Blanco, Marian Martínez-Balbás, Xavier de la Cruz

Journal:

Year:

2007

Language:

english

File:

PDF, 714 KB

english, 2007

36

Investigation of shape variations in the antibody binding site by molecular dynamics computer simulation

Xavier de la Cruz, Alan E. Mark, José Tormo, Ignacio Fita, Wilfred F. van Gunsteren

Journal:

Journal of Molecular Biology

Year:

1994

Language:

english

File:

PDF, 1.05 MB

english, 1994

37

Alternative Splicing Mechanisms for the Modulation of Protein Function: Conservation Between Human and Other Species

Abel Valenzuela, David Talavera, Modesto Orozco, Xavier de la Cruz

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 346 KB

english, 2004

38

Characterization of Compensated Mutations in Terms of Structural and Physico-Chemical Properties

Carles Ferrer-Costa, Modesto Orozco, Xavier de la Cruz

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 517 KB

english, 2007

39

Structure and role of coupling proteins in conjugal DNA transfer

F.Xavier Gomis-Rüth, Fernando de la Cruz, Miquel Coll

Journal:

Research in Microbiology

Year:

2002

Language:

english

File:

PDF, 254 KB

english, 2002

40

Red de investigación clínica y básica en insuficiencia cardiaca (REDINSCOR). Redes temáticas de investigación cooperativa del Instituto de Salud Carlos III

Luis Alonso-Pulpón, Xavier Borrás, Josep Brugada, Juan Cinca, Arturo Fernández Cruz, José R. González Juanatey, Carlos Sáenz de la Calzada, Mariano Valdés, Rafael Vázquez, Julián Pérez Villacastín

Journal:

Revista Española de Cardiología

Year:

2008

File:

PDF, 100 KB

2008

41

Data Mining of Molecular Dynamics Trajectories of Nucleic Acids

Noy, Agnes, Meyer, Tim, Rueda, Manuel, Ferrer, Carles, Valencia, Antonio, Pérez, Alberto, de la Cruz, Xavier, López-Bes, J. M., Pouplana, R., Fernandez-Recio, J., Luque, F. Javier, Orozco, Modesto

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2006

Language:

english

File:

PDF, 1.50 MB

english, 2006

42

Identification and characterization of a novel splice site mutation in the SERPING1 gene in a family with hereditary angioedema

Colobran, Roger, Lois, Sergio, de la Cruz, Xavier, Pujol-Borrell, Ricardo, Hernández-González, Manuel, Guilarte, Mar

Journal:

Clinical Immunology

Year:

2014

Language:

english

File:

PDF, 483 KB

english, 2014

43

Exploring the Essential Dynamics of B-DNA

Pérez, Alberto, Blas, José Ramón, Rueda, Manuel, López-Bes, Jose María, de la Cruz, Xavier, Orozco, Modesto

Journal:

Journal of Chemical Theory and Computation

Year:

2005

Language:

english

File:

PDF, 168 KB

english, 2005

44

Scoring by Intermolecular Pairwise Propensities of Exposed Residues (SIPPER): A New Efficient Potential for Protein−Protein Docking

Pons, Carles, Talavera, David, de la Cruz, Xavier, Orozco, Modesto, Fernandez-Recio, Juan

Journal:

Journal of Chemical Information and Modeling

Year:

2011

Language:

english

File:

PDF, 3.62 MB

english, 2011

45

Exploring the Binding Mode of Semicarbazide-Sensitive Amine Oxidase/VAP-1: Identification of Novel Substrates with Insulin-like Activity

Marti, Luc, Abella, Anna, de la Cruz, Xavier, García-Vicente, Silvia, Unzeta, Mercedes, Carpéné, Christian, Palacín, Manuel, Testar, Xavier, Orozco, Modesto, Zorzano, Antonio

Journal:

Journal of Medicinal Chemistry

Year:

2004

Language:

english

File:

PDF, 549 KB

english, 2004

46

Quality of life in patients with non–muscle-invasive bladder cancer: One-year results of a multicentre prospective cohort study

Schmidt, Stefanie, Francés, Albert, Lorente Garin, José Antonio, Juanpere, Nuria, Lloreta Trull, José, Bonfill, Xavier, Martinez-Zapata, María José, Morales Suarez-Varela, Maria, de la Cruz, Javier, E

Journal:

Urologic Oncology: Seminars and Original Investigations

Year:

2015

Language:

english

File:

PDF, 455 KB

english, 2015

47

Molecular damage in Fabry disease: Characterization and prediction of alpha-galactosidase A pathological mutations

Riera, Casandra, Lois, Sergio, Domínguez, Carmen, Fernandez-Cadenas, Israel, Montaner, Joan, Rodríguez-Sureda, Victor, de la Cruz, Xavier

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 834 KB

english, 2015

48

Alternative Splicing of Transcription Factors' Genes: Beyond the Increase of Proteome Diversity

Talavera, David, Orozco, Modesto, de la Cruz, Xavier

Journal:

Comparative and Functional Genomics

Year:

2009

Language:

english

File:

PDF, 232 KB

english, 2009

49

The (In)dependence of Alternative Splicing and Gene Duplication

Talavera, David, Vogel, Christine, Orozco, Modesto, Teichmann, Sarah A., de la Cruz, Xavier

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 787 KB

english, 2007

50

Capacity of dental equipment to interfere with cardiac implantable electrical devices

Lahor-Soler, Eduard, Miranda-Rius, Jaume, Brunet-Llobet, Lluís, Sabaté de la Cruz, Xavier

Journal:

European Journal of Oral Sciences

Year:

2015

Language:

english

File:

PDF, 278 KB

english, 2015